DeFCoM: Supervised Learning for Genomic Footprinting

Author:	Bryan Quach and contributors
Date:	January 18, 2017
Version:	1.0

Table of Contents

• Introduction
• Installation
  • Dependencies
  • Downloading
  • Installing
    • Using pip
    • From source
• Quick Start Guide
  • Running DeFCoM
  • DeFCoM Output
• Configuration File
  • Structure
  • [data] Variables
  • [options] Variables
• Tutorial
• API
  • Overview
  • Scripts
  • Modules
    • defcom.alignment module
    • defcom.features module
    • defcom.genome module
    • defcom.motif_sites module
    • defcom.performance_stats module
• Developer’s Guide
• Glossary
• FAQ

Indices and tables

• Index
• Module Index
• Search Page